Results 1 - 25 of 38 results out of about 287 pages. (0.29 seconds)
- Explicet Previous Releases . . . 101 matches
- ...= Explicet Previous Releases =
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==== Explicet Version 2.9.4 ====
[[Explicet for 64 bit Windows Systems - v2.9.4|Explicet for 64 bit Windows Systems]]
[[Explicet for 32 b...
- Explicet Tutorial . . . 38 matches
- ...= Explicet Basic Tutorial =
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The information below comes from the Explicet tutorial which is automatically installed on your computer by the Windows, Mac, and Linux instal...
- Explicet Downloads . . . 32 matches
- ...= Version 2.10.5 Explicet Downloads =
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== Explicet Software: ==
{{{#!wiki note
'''New Features in Version 2.10.5'''
For a list of new features in Explicet version 2.10.5...
- Explicet . . . 27 matches
- ...right"}}
{{attachment:homepagescreenshot.JPG|alt text|align="right"}}
<<Color2("~+'''Explicet published in Bioinformatics!'''+~ ~-To view the publication, click here: [[http://bio...
- Why Use Explicet? . . . 7 matches
- ...= Why Use Explicet? =
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By their very nature, microbiome datasets have many sub-components; often they contain data derived from many samples, with many sequences comprisin...
- Explicet Documentation . . . 7 matches
- ...= Explicet Documentation =
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The information below comes from the Explicet handbook which is automatically installed on your computer by the Windows, Mac, and Linux install...
- Data Management Capabilities in Explicet . . . 5 matches
- ...= Data Management Capabilities in Explicet =
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The fundamental data item in Explicet is the “project”, the data for which are stored in a single file. Optionally, a projec...
- FAQ . . . 59 matches
- ...= Frequently Asked Questions =
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[[#How2CiteAnchor|1. How do I cite Explicet in my publications?]]
[[#SourceAnchor|2. How do I get the source for Explicet per the GPLv3 li...
- Linux Installation . . . 17 matches
- ...= Linux Installation =
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Explicet for Linux is supplied as an executable which is statically linked with the Qt and Qwt libraries required. The executable has been tested ...
- Synopsis . . . 15 matches
- ...= Synopsis =
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Explicet is a visualization software application that facilitates analysis of taxonomy-based microbiome datasets. The goal of the Explicet development proces...
- Getting Started . . . 13 matches
- ...= Getting Started with Explicet =
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The fastest way to get started with Explicet is to:
1.#1 Download the correct installer for your computer from the [[Explicet Downloa...
- Select Data . . . 11 matches
- ...ected
.Type over the existing filter name in the dialog box
== B. Group Data ==
.Explicet allows the data making up multiple libraries to be combined by averaging the relative...
- Moving Data to and from Other Toolsets: Qiime, R . . . 11 matches
- ...Data to and from Other Toolsets: Qiime, R =
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== A. Moving Data from Qiime to Explicet ==
.Explicet can import data from Qiime via Qiime’s "classic" OTU table format. Mor...
- Projects . . . 10 matches
- ...orner of the main window. Users may choose to use the data management capabilities of Explicet, which are shown in [[Data Management Capabilities in Explicet|Figure 2]]. As shown ...
- Mac OS X Installation . . . 10 matches
- ...forms:'''
.Mac OS 10.7 (Lion), Mac OS 10.8 (Mt. Lion), Mac OS 10.9 (Mavericks): use Explicet_Mac64
.Mac OS 10.6 (Snow Leopard): use Explicet_Mac32
'''Installation:'''
.Downl...
- Microsoft Windows Installation . . . 9 matches
- ...on =
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'''Supported Platforms:'''
.Windows Vista, Windows 7, Windows 8: use Explicet_Win64
.Windows XP: use Explicet_Win32
'''Installation:'''
.Download the platfor...
- Figures . . . 9 matches
- ...'Letter''', '''A1''' or '''Custom'''. When you first change a page size to '''A1''', Explicet switches to millimeter '''Units''', but you can switch back to inches if you so desir...
- Statistics . . . 8 matches
- ...versity ==
.Alpha diversity indices measure the sequence/OTU diversity of individual Explicet libraries. When comparing alpha diversity metrics between libraries with different s...
- Condensed Quick-Start Example . . . 8 matches
- ... Quick-Start Example =
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The following guide presents a few quick examples of Explicet capabilities. For a more thoroughly documented example of the Explicet project proce...
- Comprehensive User Guide: Projects . . . 8 matches
- ...orner of the main window. Users may choose to use the data management capabilities of Explicet, which are shown in Figure 2 (page 9). As shown in the figure, projects may contain ...
- Import OTU Data . . . 6 matches
- ...= Import OTU Data =
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The Explicet program provides a GUI for exploring OTU data, but does not generate the OTU data. Rather, taxonomic data for a project can be imported ...
- Citations . . . 6 matches
- ...= Citations =
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== Citing Explicet: ==
Robertson CE, Harris JK, Wagner BD, Granger D, Browne K, Tatem B, Feazel LM, Park K, Pace NR, and Frank DN. Explicet: Graphical user ...
- Terminology . . . 5 matches
- ...atter of which we believe to map onto a phylogenetically coherent group of organisms. Explicet views numerical OTUs as interchangeable with classification OTUs.
'''Metadata''': ...
- Metadata . . . 5 matches
- ...ndow will open
.The upper left pane of the window shows the metadata fields found by Explicet in the metadata file
*When '''Libraries not found''' is selected, any libraries fou...
- Main Window Overview . . . 5 matches
- ...ndow_overview.PNG|placeholder|width=700 height=875}}
<<Color2("'''The main window of Explicet has three parts (from top to bottom):'''",col=blue,bcol=white,font=helvetica)>>
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